What comes off,
and what gets paid over.
The deduction applies to the labour element, not the whole invoice, and deducting from the wrong base is the commonest CIS error there is. Put in the split and it shows both figures. Nothing is sent anywhere.
Every deduction,
against the order.
One invoice is arithmetic. A month of them is a return, a set of deduction statements, and a subcontractor who will check. Held against the order, each deduction sits with the payment it came from.
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It comes off labour,
not off the invoice.
What the calculator catches, what else is excluded from the deduction, and where the rate actually comes from.
A worked example
A registered subcontractor invoices £5,000 of labour and £1,200 of materials, both net of VAT, so £6,200 in total. The verification came back at the standard rate of 20 per cent.
The deduction is 20 per cent of the labour element only: £1,000. You pay over £5,200 and send £1,000 to HMRC with the monthly return.
Deduct from the gross invoice instead and you take £1,240, over-deducting £240 on one invoice. That is the single most common CIS error there is. The subcontractor is short, the deduction statement is wrong, and the correction has to run through both parties’ records.
What this catches
Enter your figures and look at the last of the three figures. It shows what the deduction would have been if it had been taken from the whole invoice instead of the labour element. On a job with a material-heavy split that difference is substantial, and it is the commonest CIS error there is.
It runs in both directions. If you are the contractor deducting, over-deducting is your error to correct and your subcontractor's cash you are holding. If you are the subcontractor being deducted from, check your last three payment and deduction statements against your own applications rather than assuming the figures are right. The money comes back slowly, through the machinery described in reclaiming CIS deductions.
What else is excluded
Materials the subcontractor supplied are the big one, but they are not the only exclusion. VAT is excluded, which is why the form asks for figures excluding it. Plant hire can be excluded in certain circumstances, as can consumable stores and, where the conditions are met, fuel other than for travelling.
Read the exclusions properly against your own invoices rather than applying them from memory. They are the difference between a correct deduction and a dispute with a subcontractor about their own cash. The scheme is set out in the CIS deductions guide.
Getting the rate right
The rate is not a judgment. It comes from verifying the subcontractor with HMRC before you pay them, and verification returns the rate you must apply. That is 20% for registered subcontractors, 30% for those who cannot be verified, and nil for those holding gross payment status.
Paying at the wrong rate is the contractor's problem rather than the subcontractor's, which is why verification belongs at onboarding alongside the other checks in vetting a subcontractor.
This is a calculator rather than tax advice, and the treatment of a particular invoice can turn on facts it does not ask about. Settle anything unusual with your accountant.
What comes off,
and what does not.
The rates and the exclusions, with the point most firms get wrong stated plainly.